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PiSCAT Plugins:
PiSCAT UAI plugin
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Contents:
Installation
Introduction to the tutorials for protein detection analysis
API Reference
Appendix
Bibliography
PiSCAT
Index
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Index
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B
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C
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D
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
auto_pixelTransforms() (piscat.Visualization.ContrastAdjustment method)
B
bin_by() (piscat.Localization.DirectionalIntensity method)
C
CameraParameters (class in piscat.InputOutput)
ColumnProjectionFPNc (class in piscat.Preproccessing)
ContrastAdjustment (class in piscat.Visualization)
convolve_fft() (piscat.Preproccessing.RadialVarianceTransform method)
cpFPNc() (piscat.Preproccessing.ColumnProjectionFPNc method)
CPUConfigurations (class in piscat.InputOutput)
create_link() (piscat.Trajectory.Linking method)
D
dense_PSFs() (piscat.Localization.SpatialFilter method)
differential_rolling() (piscat.BackgroundCorrection.DifferentialRollingAverage method)
DifferentialRollingAverage (class in piscat.BackgroundCorrection)
DirectionalIntensity (class in piscat.Localization)
DirectoryType (class in piscat.InputOutput)
Display (class in piscat.Visualization)
DisplayDataFramePSFsLocalization (class in piscat.Visualization)
DisplayPSFs_subplotLocalizationDisplay (class in piscat.Visualization)
DisplaySubplot (class in piscat.Visualization)
dog() (piscat.Localization.PSFsExtraction method)
doh() (piscat.Localization.PSFsExtraction method)
F
FastRadialSymmetryTransform (class in piscat.Preproccessing)
feature2df() (in module piscat.Localization)
FFT2D (class in piscat.Preproccessing)
filter() (piscat.Preproccessing.GrayGuidedFilter method)
(piscat.Preproccessing.GuidedFilter method)
(piscat.Preproccessing.MultiDimGuidedFilter method)
filter_tarj_base_length() (piscat.Trajectory.TemporalFilter method)
Filters (class in piscat.Preproccessing)
find_status_line() (piscat.InputOutput.StatusLine method)
fit_2D_Gaussian_varAmp() (in module piscat.Localization)
fit_Gaussian2D_wrapper() (piscat.Localization.PSFsExtraction method)
flat_field() (piscat.Preproccessing.Filters method)
FrequencyFPNc (class in piscat.Preproccessing)
frst_one_PSF() (piscat.Localization.PSFsExtraction method)
G
gaussian() (piscat.Preproccessing.Filters method)
gaussian_2d() (in module piscat.Localization)
gen_r_kernel() (piscat.Preproccessing.RadialVarianceTransform method)
generate_all_kernels() (piscat.Preproccessing.RadialVarianceTransform method)
get_fshape() (piscat.Preproccessing.RadialVarianceTransform method)
GrayGuidedFilter (class in piscat.Preproccessing)
GuidedFilter (class in piscat.Preproccessing)
H
high_pass() (piscat.Preproccessing.RadialVarianceTransform method)
I
Image2Video (class in piscat.InputOutput)
improve_localization_with_frst() (piscat.Localization.PSFsExtraction method)
index_coords() (piscat.Localization.DirectionalIntensity method)
interpolate_pixels_along_line() (piscat.Localization.DirectionalIntensity method)
J
JupyterDisplay (class in piscat.Visualization)
JupyterDisplay_StatusLine (class in piscat.Visualization)
JupyterFPNcDisplay (class in piscat.Visualization)
JupyterPSFs_2_modality_subplotLocalizationDisplay (class in piscat.Visualization)
JupyterPSFs_localizationDisplay (class in piscat.Visualization)
JupyterPSFs_localizationPreviewDisplay (class in piscat.Visualization)
JupyterPSFs_subplotLocalizationDisplay (class in piscat.Visualization)
JupyterPSFs_TrackingDisplay (class in piscat.Visualization)
JupyterSelectedPSFs_localizationDisplay (class in piscat.Visualization)
L
Linking (class in piscat.Trajectory)
list2dataframe() (in module piscat.Localization)
load_dict_from_hdf5() (in module piscat.InputOutput)
localization_data() (piscat.Analysis.PlotProteinHistogram method)
log() (piscat.Localization.PSFsExtraction method)
M
median() (piscat.Preproccessing.Filters method)
MedianProjectionFPNc (class in piscat.Preproccessing)
mFPNc() (piscat.Preproccessing.MedianProjectionFPNc method)
MultiDimGuidedFilter (class in piscat.Preproccessing)
N
NoiseFloor (class in piscat.BackgroundCorrection)
O
outlier_frames() (piscat.Localization.SpatialFilter method)
P
pixel_transforms() (piscat.Visualization.ContrastAdjustment method)
plot2df() (in module piscat.Visualization)
plot3() (in module piscat.Visualization)
plot_directional_intensity() (piscat.Localization.DirectionalIntensity method)
plot_fit_histogram() (piscat.Analysis.PlotProteinHistogram method)
plot_hist() (piscat.Analysis.ReadProteinAnalysis method)
plot_hist_2Dfit() (piscat.Analysis.ReadProteinAnalysis method)
plot_histogram() (in module piscat.Visualization)
(piscat.Analysis.PlotProteinHistogram method)
plot_localization_heatmap() (piscat.Analysis.PlotProteinHistogram method)
(piscat.Analysis.ReadProteinAnalysis method)
plot_polar_image() (piscat.Localization.DirectionalIntensity method)
plot_result() (piscat.BackgroundCorrection.NoiseFloor method)
PlotProteinHistogram (class in piscat.Analysis)
prepare_fft() (piscat.Preproccessing.RadialVarianceTransform method)
protein_analysis() (in module piscat.Analysis)
protein_trajectories_list2dic() (in module piscat.Trajectory)
psf_detection() (piscat.Localization.PSFsExtraction method)
psf_detection_preview() (piscat.Localization.PSFsExtraction method)
PSFsExtraction (class in piscat.Localization)
R
RadialCenter (class in piscat.Localization)
RadialVarianceTransform (class in piscat.Preproccessing)
read_avi() (in module piscat.InputOutput)
read_binary() (in module piscat.InputOutput)
read_cpu_setting() (piscat.InputOutput.CPUConfigurations method)
read_fits() (in module piscat.InputOutput)
read_json2dic() (in module piscat.InputOutput)
read_mat() (in module piscat.InputOutput)
read_png() (in module piscat.InputOutput)
read_status_line() (piscat.InputOutput.StatusLine method)
read_tif() (in module piscat.InputOutput)
ReadProteinAnalysis (class in piscat.Analysis)
remove_side_lobes_artifact() (piscat.Localization.SpatialFilter method)
reproject_image_into_polar() (piscat.Localization.DirectionalIntensity method)
return_df() (piscat.InputOutput.DirectoryType method)
run() (piscat.BackgroundCorrection.DifferentialRollingAverage method)
(piscat.Preproccessing.ColumnProjectionFPNc method)
(piscat.Preproccessing.FFT2D method)
(piscat.Preproccessing.MedianProjectionFPNc method)
(piscat.Visualization.DisplayDataFramePSFsLocalization method)
rvt() (piscat.Preproccessing.RadialVarianceTransform method)
rvt_core() (piscat.Preproccessing.RadialVarianceTransform method)
rvt_kernel() (piscat.Preproccessing.RadialVarianceTransform method)
rvt_video() (piscat.Preproccessing.RadialVarianceTransform method)
S
save_df2csv() (in module piscat.InputOutput)
save_dic2json() (in module piscat.InputOutput)
save_dic_to_hdf5() (in module piscat.InputOutput)
save_hist_data() (piscat.Analysis.PlotProteinHistogram method)
(piscat.Analysis.ReadProteinAnalysis method)
save_list_to_hdf5() (in module piscat.InputOutput)
save_mat() (in module piscat.InputOutput)
sorting_linking() (piscat.Trajectory.Linking method)
SpatialFilter (class in piscat.Localization)
StatusLine (class in piscat.InputOutput)
symmetric_PSFs() (piscat.Localization.SpatialFilter method)
T
temporal_median() (piscat.Preproccessing.Filters method)
TemporalFilter (class in piscat.Trajectory)
trajectory_counter() (piscat.Trajectory.Linking method)
U
update_fFPN() (piscat.Preproccessing.FrequencyFPNc method)
update_wFPN() (piscat.Preproccessing.FrequencyFPNc method)
V
v_profile() (piscat.Trajectory.TemporalFilter method)
v_trajectory() (piscat.Trajectory.TemporalFilter method)
video_reader() (in module piscat.InputOutput)
W
write_binary() (in module piscat.InputOutput)
write_GIF() (in module piscat.InputOutput)
write_MP4() (in module piscat.InputOutput)
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